Concerted Evolution
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Concerted Evolution- A definition

Concerted evolution is the phenomenon where
paralogous Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the evolutionary history of life. Two segments of DNA can have shared ancestry because of three phenomena: either a sp ...
genes within one
species In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate s ...
are more closely related to one another than to members of the same gene family in closely related species. In other terms, when specific members of a family are investigated, a greater amount of similarity is found within a species rather than between species. This is suggesting that members within this family do not in fact evolve independently of one another. The concept of concerted evolution is a molecular process which leads to the homogenization of DNA sequences. As shown from the diagram on the right, as each organism evolves, it creates a species that is more closely related to their genes than anyone else in their species. This is demonstrated by the different colors of circles. If each different color is representing a different organism in one species, this is showing that once the blue and the orange reproduce, they create organisms that are incredibly alike to them (thus they are represented as the same color) This fundamental process operates in all organisms, even if it doesn't seem ultimately present at every moment.


Causes

Concerted evolution (phenomenon of duplicated genes) may often be caused by the genetic exchange known as gene conversion. This other phenomenon is known as the "non-reciprocal exchange of genetic material between homologous sequences." Gene conservation can do a few things... * Decrease mutational load * Eliminate deleterious mutations * Spread advantageous alleles ...thus playing a role in concerted evolution. Gene conversion is also reliant on the gene sequences that are involved in the current process. Some entire gene sequences have undergone the process of concerted evolution whereas others have a more mosaic pattern where some genes are homogenized, and others diverge without this conversion.


Example

An example can be seen in bacteria: ''
Escherichia coli ''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus '' Esc ...
'' (can cause severe food poisoning in hosts) has seven
operon In genetics, an operon is a functioning unit of DNA containing a cluster of genes under the control of a single promoter. The genes are transcribed together into an mRNA strand and either translated together in the cytoplasm, or undergo splic ...
s encoding various
Ribosomal RNA Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosom ...
. For each of these genes, rDNA sequences are essentially identical among all of the seven operons (sequence divergence of only 0.195%). In a closely related species, ''
Haemophilus influenzae ''Haemophilus influenzae'' (formerly called Pfeiffer's bacillus or ''Bacillus influenzae'') is a Gram-negative, non-motile, coccobacillary, facultatively anaerobic, capnophilic pathogenic bacterium of the family Pasteurellaceae. The bacter ...
'' its six ribosomal RNA operons are entirely identical. When the 2 species are compared together however, the sequence divergence of the 16S rRNA gene between them is 5.90%.


Factors Affecting the Rate of Concerted Evolution

# The specific number of repeats counted # The arrangement of those repeats aforementioned (dispersed vs. clustered) # Relative sizes of slowly and rapidly evolving regions (within that repeating unit) ## Noncoding regions evolve very rapidly ## Coding regions evolve very slowly # Restriction on homogeneity # Population size # Requirement of doses


Requirements

* The horizontal transfer of mutations among the family members (homogenization) * The spread of mutations in the population (fixation)


Hypotheses To Explain Concerted Evolution

# High sequence similarity between paralogs may be maintained by
homologous recombination Homologous recombination is a type of genetic recombination in which genetic information is exchanged between two similar or identical molecules of double-stranded or single-stranded nucleic acids (usually DNA as in cellular organisms but may ...
events that lead to
gene conversion Gene conversion is the process by which one DNA sequence replaces a homologous sequence such that the sequences become identical after the conversion event. Gene conversion can be either allelic, meaning that one allele of the same gene replaces a ...
, effectively copying some sequence from one and overwriting the homologous region in the other. Another possible hypothesis that has yet to be disproved is that rapid waves of gene duplication are responsible for the apparently "concerted" homogeneity of tandem and unlinked repeats seen in concerted evolution. # Rapid amplification of a gene, usually assisted by recombination events in IS elements, in bacteria, or in other repetitive genetic elements ( ERV, LINE, SINE, etc.), for example, in eukaryotes. Unchecked transposition events of these
transposable elements A transposable element (TE, transposon, or jumping gene) is a nucleic acid sequence in DNA that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genetic identity and genome size. Trans ...
are thought to be associated with increases in the copy number of the gene. # In sexually reproducing organisms unequal crossing over during meiosis may be responsible for amplification due to misalignment of repeated sequences. # Redistribution of genes requires transposition, probably assisted by the same repetitive genetic elements as in 1). # Homogenization of alleles by
gene conversion Gene conversion is the process by which one DNA sequence replaces a homologous sequence such that the sequences become identical after the conversion event. Gene conversion can be either allelic, meaning that one allele of the same gene replaces a ...
may also play a role in sexually reproducing organisms. Some genes may be more prone to
gene conversion Gene conversion is the process by which one DNA sequence replaces a homologous sequence such that the sequences become identical after the conversion event. Gene conversion can be either allelic, meaning that one allele of the same gene replaces a ...
than others, thus reinforcing the unity of the genes within a gene family of a species.


Evolution and speciation

Findings of concerted evolution, particularly in
ribosomal DNA Ribosomal DNA (rDNA) is a DNA sequence that codes for ribosomal RNA. These sequences regulate transcription initiation and amplification, and contain both transcribed and non-transcribed spacer segments. In the human genome there are 5 chromo ...
genes, led the Cambridge molecular geneticist Gabriel Dover to his controversial proposal of molecular drive, which in his view was an evolutionary principle distinct both from natural selection and from
genetic drift Genetic drift, also known as allelic drift or the Wright effect, is the change in the frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene variants to disappear completely and there ...
. Closely related species or even populations may differ in their nucleolus organizing regions (NORs), which are genomic regions that contain many copies of
ribosomal RNA Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal ...
genes in eukaryotes, typically found within or adjacent to highly repetitive parts of the genome such as
centromeres The centromere links a pair of sister chromatids together during cell division. This constricted region of chromosome connects the sister chromatids, creating a short arm (p) and a long arm (q) on the chromatids. During mitosis, spindle fibers a ...
or
telomeres A telomere (; ) is a region of repetitive nucleotide sequences associated with specialized proteins at the ends of linear chromosomes. Although there are different architectures, telomeres, in a broad sense, are a widespread genetic feature mos ...
in mammals such as the house mouse ''
Mus musculus Mus or MUS may refer to: Abbreviations * MUS, the NATO country code for Mauritius * MUS, the IATA airport code for Minami Torishima Airport * MUS, abbreviation for the Centre for Modern Urban Studies on Campus The Hague, Leiden University, Neth ...
'' or insects such as the grasshopper '' Podisma pedestris''.


Future Research

In future studies, it may want to be looked at whether if repeats are relocated to different parts of the genome in related species what exactly would happen to the ancestral copies. Another aspect that could be studied includes tandem arrays of new ribosomal genes when they are born and how they become lost over time. The link between concerted evolution or molecular drive both playing a role in speciation is currently unknown but will be looked into in the near future. While this is not currently correlated, it seems entirely possible that for example some hybrids or backcrosses between species with different
nucleolar organizing regions ] Nucleolus organizer regions (NORs) are chromosome, chromosomal regions crucial for the formation of the nucleolus. In humans, the NORs are located on the short arms of the acrocentric chromosomes 13, 14, 15, 21 and 22, the genes RNR1, RNR2, RNR ...
/
ribosomal DNA Ribosomal DNA (rDNA) is a DNA sequence that codes for ribosomal RNA. These sequences regulate transcription initiation and amplification, and contain both transcribed and non-transcribed spacer segments. In the human genome there are 5 chromo ...
repeat regions may have reduced fitness as a result of over- or under-expression of
ribosomal RNA Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal ...
.


References

{{reflist Population genetics Molecular genetics